1.    Kinoshita, K., Nakamura, H. 2005. Identification of the ligand binding sites on the molecular surface of proteins. Protein Sci 14: 711-718.
    2.    Kinoshita, K., and Nakamura, H. 2004. eF-site and PDBjViewer: database and viewer for protein functional sites. Bioinformatics 20: 1329-1330.
    3.    Kinoshita, K., and Nakamura, H. 2003. Identification of protein biochemical functions by similarity search using the molecular surface database eF-site. Protein Sci 12: 1589-1595.
    4.    Kinoshita, K., and Nakamura, H. 2003. Protein informatics towards function identification. Curr Opin Struct Biol 13: 396-400.
    5.    Handa, N., Terada, T., Kamewari, Y., Hamana, H., Tame, J.R., Park, S.Y., Kinoshita, K., Ota, M., Nakamura, H., Kuramitsu, S., et al. 2003. Crystal structure of the conserved protein TT1542 from Thermus thermophilus HB8. Protein Sci 12: 1621-1632.
    6.    Kinoshita, K., Furui, J. , and Nakamura, H. 2001. Identification of Protein Functions from a Molecular Surface Database, eF-site, J. Struct Funct Genomics, 2:9-22
    7.    Nakamura, H., and Nishida, S. 1987 Numerical calculations of electrostatic potentials of protein-solvent systems by the self consistent boundary method.J. Phys. Soc. Jpn., 56:1609-1622
    8.    Connolly, M. L. 1987. Solvent-accessible surfaces of proteins and nucleic acids. Science, 221:709-713